The Stockinger Lab
 

Eric J. Stockinger

Department of Horticulture and Crop Science

The Ohio State University/OARDC

Wooster OH 44691

330/263-3876

stockinger.4@osu.edu


Personal Background

My professional experience spans from the horticultural use of woody ornamental trees and shrubs for the landscape to transcriptional regulation of environmental stress responsive genes in the model plant species Arabidopsis thaliana. My research interests are focused on understanding the molecular-genetic basis of freezing tolerance in barley, wheat, and rye. The long term goal is to utilize this information to improve crop performance.

Professional Preparation

University of California, Riverside CA
Plant Science B.S 1985
University of California, Riverside CA Botany (Plant Genetics) Ph.D. 1993
Michigan State University, East Lansing MI Plant Genetics Postdoc 1993-1994
Michigan State University, East Lansing MI Gene Regulation Postdoc 1994-2000


Academic Appointments

2006-Present   
Associate Professor, Dept of Horticulture and Crop Science. The Ohio State University/OARDC, Wooster OH 44691
2000-2006 Assistant Professor, Dept of Horticulture and Crop Science. The Ohio State University/OARDC, Wooster OH 44691
1994-2000 Postdoctoral Research Assistant, Dept of Crop & Soil Sciences, Michigan State University, East Lansing MI; Research Advisor: Michael F. Thomashow
1993-1994 Postdoctoral Research Assistant, Dept of Horticulture, Michigan State University, East Lansing MI; Research Advisor: Amy F. Iezzoni
1986-1993 Research Assistant, Dept of Botany & Plant Sciences, University of California Riverside CA; Research Advisor: Linda L. Walling
1990 Teaching Assistant (Molecular Biology), Dept of Biology, University of California, Riverside CA; Teaching Advisor: Brad Hyman
1986 Teaching Assistant (Genetics), Dept of Biology, University of California, Riverside CA; Teaching Advisor: Gary Jones
1984-1986 Undergraduate Research Assistant, Dept of Botany & Plant Sciences, University of California, Riverside CA; Research Advisor: J. Giles Waine

 

Other Professional Positions Held

1986
California Nurseryman, Cherry Valley Nursery, Cherry Valley CA.
1979-1984   Nurseryman/Retail Sales, Landscape Growers Inc., Monterey Park CA
1978 Firefighter, USDA Forest Service, Glendora CA.

 

Courses taught

Agricultural genomics (http://www.ag.ohio-state.edu/~wang/PP703/, co-instructor)

Molecular genetics of low temperature tolerance in plants                                                                                                                              (Plant Abiotic Stress short course, University of Saskatchewan, Saskatoon, Canada)

Yeast One-Hybrid (laboratory exercise)

Molecular Genetic Control of Flowering: Integration of Environmental Signals with the Endogenous Program of Plant Development (journal club)

Transcription factors controlling plant traits of agroeconomic value (journal club)

Crop Breeding (guest lecture, plant cellular organization and genetic structure)


Thesis and postdoctoral advisees

Current (1)

Completed (4)

 

 

 

Ph.D. Student Advisory Committee Service

Current (6)

Completed (5)



Publications

Stockinger EJ (2009) Winter hardiness and the CBF genes in the Triticeae. In, “Plant Cold Hardiness From the Laboratory to the Field,” LV Gusta, M Wisniewski and KK Tanino, (eds.), CABI Publishing Oxon, UK. pp. 119-130.

Pennycooke, J.C., Cheng, H., Roberts, S.M., Yang, Q., Rhee, S.Y., and Stockinger, E.J. (2008) The low temperature-responsive, Solanum CBF1 genes maintain high identity in their upstream regions in a genomic environment undergoing gene duplications, deletions, and rearrangements. Plant Mol. Biol. 67, 483-497.

Pennycooke, J.C., Cheng, H. and Stockinger, E.J. (2008) Comparative genomic sequence and expression analyses of Medicago truncatula and alfalfa subspecies falcata COLD-ACCLIMATION-SPECIFIC genes. Plant Physiol. 146, 1242-1254.

Knox, A.K., Li, C., Vagujfalvi, A., Galiba, G., Stockinger, E.J., and Dubcovsky, J. (2008) Identification of candidate CBF genes for the frost tolerance locus Fr-Am2 in Triticum monococcum. Plant Mol Biol. 67, 257-270.

Xiao, H., Jiang, N., Schaffner, E., Stockinger, E.J., and van der Knaap, E. (2008) A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit. Science 319, 1527-1530.

Stockinger, E.J., Skinner, J.S., Gardner, K.G., Francia, E., and Pecchioni, N.  (2007) Expression levels of barley Cbf genes at Frost resistanceH2 are dependent upon alleles at Fr‑H1 and Fr‑H2.  Plant J.  51:308-321.

Francia, E., Barabaschi, D., Tondelli, A., Laidò, G., Rizza, F., Stanca, A.M. Busconi, M., Fogher, C., Stockinger, E.J., and Pecchioni, N.  (2007) Fine mapping of a HvCBF gene cluster at the frost resistance locus Fr-H2 in barley. Theor. Appl. Genet. 115:1083-1091.

Tondelli, A., Francia, E., Barabaschi, D., Aprile, A., Skinner, J.S., Stockinger, E.J., Stanca, A.M., and Pecchioni, N. (2006) Mapping regulatory genes as candidates for cold and drought stress tolerance in barley. Theor. Appl. Genet. 112:445-454.

Skinner, J.S., Szűcs, P., von Zitzewitz, J., Marquez-Cedillo, L., Filichkin, T., Stockinger, E.J., Chen, T.H.H., and Hayes P.M.  (2006) Mapping of barley homologs to genes that regulate low temperature tolerance in Arabidopsis. Theor. Appl. Genet. 112:832-842.

Stockinger, E.J., Cheng, H., and Skinner, J.S. (2005) Structural organization of barley CBF genes coincident with a QTL for cold hardiness. In, “Cold Hardiness in Plants,” THH Chen, M Uemura and S Fujikawa, (eds.), CABI Publishing, Wallingford, Oxon, UK. pp. 53-63.

Skinner, J.S., von Zitzewitz, J., Marquez-Cedillo, L., Filichkin, T., Szûcs, P., Amundsen, K., Stockinger E.J., Thomashow, M.F., Chen, T.H.H., and Hayes, P.M. (2006) Barley Contains a Large CBF Gene Family Associated with Quantitative Cold Tolerance Traits. In, “Cold Hardiness in Plants,” THH Chen, M Uemura and S Fujikawa, (eds.), CABI Publishing Oxon, UK pp. 30-52.

Skinner, J.S., von Zitzewitz, J., Szűcs, P., Marquez-Cedillo, L., Filichkin, T., Amundsen, K., Stockinger, E.J., Thomashow, M.F., Chen, T.H.H., and Hayes P.M. (2005) Structural, functional and phylogenetic characterization of a large CBF gene family in barley. Plant Mol. Biol. 59:533-551.

Wang, Z., Triezenberg, S.J., Thomashow, M.F., and Stockinger E.J. (2005) Multiple hydrophobic motifs in Arabidopsis CBF1 COOH-terminus provide functional redundancy in trans-activation. Plant Mol. Biol. 58:543-559.

Zhang, X., Fowler, S.G., Cheng, H., Lou, Y., Rhee, S.Y., Stockinger, E.J., and Thomashow, M.F. (2004) Freezing Sensitive Tomato has a Functional CBF Cold Response Pathway, but a CBF Regulon that Differs from that of Freezing Tolerant Arabidopsis. Plant J. 39:905-919.

Coaker, G.L., Willard, B., Kinter, M., Stockinger, E.J., and Francis, D.M. (2004) Proteomic analysis of resistance mediated by Rcm 2.0 and Rcm 5.1, two loci controlling resistance to bacterial canker of tomato. Mol. Plant Microbe Interact. 17:1019-1028.

Stockinger, E.J., Mao, Y., Regier, M., Triezenberg, S.J. and Thomashow, M.F. (2001) Transcriptional Adaptor and Histone Acetyltransferase Proteins in Arabidopsis and their Interactions with CBF1, a Transcriptional Activator Involved in Cold-Regulated Gene Expression. Nucleic Acids Res. 29:1524-1533.

Thomashow, M.F., Gilmour, S.J., Stockinger, E.J., Jaglo-Ottosen, K.R., Zarka, D.G. (2001) Role of the Arabidopsis CBF transcriptional activators in cold acclimation. Physiol. Plant. 112:171-175.

Gilmour, S.J., Zarka, D.G., Stockinger, E.J., Salazar, M.P., Houghton, J.M., and Thomashow, M.F. (1998) Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J. 16:433-442.

Stockinger, E.J., Gilmour, S.J. and Thomashow, M.F. (1997) Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit. Proc. Natl. Acad. Sci. U.S.A. 94:1035-1040.

Thomashow, M.F., Stockinger, E.J., and Gilmour, S.J. (1997) Regulation of plant gene expression in response to low temperature. In, “Plant Cold Hardiness. Molecular Biology, Biochemistry and Physiology,” PH Li and THH Chen (eds.), Plenum, New York. pp. 29-34.

Thomashow, M.F., Stockinger, E.J., Jaglo-Ottosen, K.R., Gilmour, S.J. and Zarka, D.G. (1997) Function and regulation of Arabidopsis thaliana COR (cold-regulated) genes. ACTA Physiol. Planta. 19:497-504.

Garvin, D.F., Federici, C.V., Stockinger, E.J., and Waines, J.G.  (1997) Genetic marker transmission in early generation common x tepary bean hybrids. J. Hered. 88:537-540.

Thomashow, M.F., Artus, N.N., Bloksberg, L.N., Gilmour, S.J., Stockinger, E.J., Wilhelm, K., Uemura, M., Webb, M.S., and Steponkus, P.L. (1996) Cold acclimation in Arabidopsis thaliana: function and regulation of COR genes. In, “Physical Stresses in Plants. Genes and their Products for Tolerance,” S. Grillo and A. Leone (eds.) Springer, Berlin. pp. 71-81.

Stockinger, E.J., Mulinix, C.A., Long, C.M., Brettin, T.S. and Iezzoni, A.F. (1996) A linkage map of sweet cherry based on RAPD analysis of a microspore-derived callus culture population. J. Hered. 87:214-218.

Stockinger, E.J., and Walling, L.L. (1994) Pto3 and Pto4: novel genes from Lycopersicon hirsutum var. glabratum conferring resistance to Pseudomonas syringae pv. tomato. Theoretical and Applied Genetics 89:879-884.

Stockinger, E.J., and Walling, L.L. (1994) A chlorophyll a/b-binding protein gene from soybean (Glycine max. [L.] Merr). Plant Physiol. 104:1475-1476.

Demmin, D.S., Stockinger, E.J., Chang, Y.C., and Walling, L.L. (1989) Phylogenetic relationships between chlorophyll a/b-binding protein (CAB) multigene family: An intra - and interspecies study. J. Mol. Evol. 29:266-279.

 

Patents Awarded

Thomashow, M.F., Gilmour, S.J., Jiang, C-Z., Fromm, M., Zarka, D.G., Jaglo-Ottosen, K.R., Stockinger, E.J., Zhang, J., and Haake, V. (2004) Plant having altered environmental stress tolerance. Patent no. 6,706,866

Thomashow, M.F., Stockinger, E.J., Jaglo-Ottosen, K.R., Gilmour, S.J., Zarka, D.G., and Jiang, C-Z. (2002) Plant having altered environmental stress tolerance. Patent no. 6,417,428

Thomashow, M.F., and Stockinger, E.J.  (1999) DNA and encoded protein which regulates cold and dehydration regulated genes. Patent no. 5,965,705

Thomashow, M.F., Stockinger, E.J., Jaglo-Ottosen, K.R., and Zarka, D.G. (1999) Plant material containing non-naturally introduced binding protein for regulating cold and dehydration regulatory genes. Patent no. 5,929,305

Thomashow, M.F., and Stockinger, E.J.  (1999) DNA and encoded protein which regulates cold and dehydration regulated genes. Patent no. 5,892,009

Thomashow, M.F., Stockinger, E.J., Jaglo-Ottosen, K.R., Zarka, D.G., and Gilmour, S.J. (1999) Method for regulating cold and dehydration regulatory genes in a plant. Patent no. 5,891,859

 

Synergistic Activities

Established summer internship program bringing students from underrepresented groups to the Stockinger lab (seven students 2002 to 2008); training of nine additional undergraduate students in research

Developed online handbook of molecular biology protocols (http://www.oardc.ohio-state.edu/stockingerlab/)

Created bacteriophage l genomic libraries in 16 plant genotypes and species (available upon request)

Journal peer review service (42 articles 2000-2009)

Grant review service (Ad hoc reviewer 12 proposals 2000-2008, and National Panel Member 2006)

 

Professional Societies

American Society for Microbiology

American Society of Plant Biologists

International Society for Plant Molecular Biology

The American Society for Horticulture Science

The Genetics Society of America